Publications

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2026

  • 17. MacColl K, Mugambi K, Oliveira J, Ferguson R, Corradi N.
    From Genes to Epigenomes: Rethinking Arbuscular Mycorrhizal Fungi Adaptation.
    Trends in Microbiology - https://doi.org.10.1016/j.tim.2026.04.012
  • 16. Jehangir M, Ahmad SF, Oliveira J, Cardoso AL, Wolf IR, Valente GT, Srikulnath K, Martins C.
    Genome Assembly of Astatotilapia latifasciata Uncovers B-Chromosome-Linked Chromatin Reorganization.
    Heredity - https://doi.org/10.1101/2025.08.05.668687
  • 15. Mugambi K, Oliveira J, Magurno F, Fossalunga AS, Novero M, Lanfranco L, Ghignone S, Yildirir G, Wang Y, Bonfante P, Corradi N.
    The 3D Genome of Gigaspora margarita Unveils Stable Chromatin and Nucleolar Organization and Symbiont-Dependent Genome Dynamics.
    New Phytologist - https://doi.org/10.64898/2026.01.14.699541
  • 14. Moreira CN, Oliveira J, Yonenaga-Yassuda Y, do Nascimento VA, Wolf IR, Martins C.
    Genome assembly of the Neotropical marsh rat Holochilus nanus (Cricetidae: Sigmodontinae) brings insights on B and sex chromosome evolution.
    Mammalian Genome - https://doi.org/10.1007/s00335-026-10205-8

2025

  • 13. Oliveira J, Lane C, Mugambi K, Yildirir G, Nicol A, Kokkoris V, Banchini C, Dadej K, Dettman J, Stefani F, Corradi N.
    Analyses of transposable elements in arbuscular mycorrhizal fungi support evolutionary parallels with filamentous plant pathogens.
    Genome Biology and Evolution - https://doi.org/10.1093/gbe/evaf038

2024

  • 12. Baptista HS, Portela LMF, Fioretto MN, Mattos R, Ribeiro IT, Lorente ABL, Oliveira JIN*, Justulin LA*.
    Influence of aging and maternal protein restriction on PIWI-Interacting RNAs in the offspring rat ventral prostate.
    Scientific Reports - https://doi.org/10.1038/s41598-024-77901-w
    *contributed equally
  • 11. Cardoso AL, Oliveira J, Climaco JPS, Venturelli NB, Moreira CN, Martins C.
    Conditions for establishing fin primary cell cultures in a wide range of ray-finned fishes.
    In Vitro Cellular & Developmental Biology - Animal - https://doi.org/10.1007/s11626-024-00963-7
  • 10. Sorwar E, Oliveira J, Malar CM, Krüger M, Corradi N.
    Assembly and comparative analyses of the Geosiphon metagenome.
    Environmental Microbiology - https://doi.org/10.1111/1462-2920.16681
  • 9. Oliveira J, Corradi N.
    Strain-specific evolution and host-specific regulation of transposable elements in the model plant symbiont Rhizophagus irregularis.
    G3: Genes|Genomes|Genetics - https://doi.org/10.1093/g3journal/jkae055
  • 8. Oliveira J, Yildirir G, Corradi N.
    From chaos comes order: Genetics and Genome Biology of Arbuscular Mycorrhizal Fungi.
    Annual Review of Microbiology - https://doi.org/10.1146/annurev-micro-041522-105143
  • 7. Oliveira JIN, Cabral-de-Mello DC, Valente GT, Martins C.
    Transcribing the enigma: The B chromosome as territory of uncharted RNAs.
    GENETICS - https://doi.org/10.1093/genetics/iyae026
  • 6. de Oliveira FS, Azambuja M, Schemberger MO, Nascimento VD, Oliveira JIN, Wolf IR, Nogaroto V, Vicari MR.
    Characterization of hAT DNA transposon superfamily in the genome of Neotropical fish Apareiodon sp.
    Molecular Genetics and Genomics - https://doi.org/10.1007/s00438-024-02190-x

2022

  • 5. Oliveira JIN, Cardoso AL, Wolf IR, Oliveira RA, Martins C.
    First characterization of PIWI-interacting RNA clusters in a cichlid fish with a B chromosome.
    BMC Biology - https://doi.org/10.1186/s12915-022-01403-2
  • 4. de Paula TG, Zanella BTT, de Moraes LN, Valente JS, Oliveira JIN, Mareco EA, Fernandez GJ, Dal-Pai-Silva M.
    Degree of piRNA sharing and Piwi gene expression in the skeletal muscle of pacu, tambaqui, and the hybrid tambacu.
    Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology - https://doi.org/10.1016/j.cbpa.2021.111120

2021

  • 3. Oliveira JIN, Fantinatti BEA, Wolf IR et al.
    Differential expression of miRNAs in the presence of B chromosome in the cichlid fish Astatotilapia latifasciata.
    BMC Genomics - https://doi.org/10.1186/s12864-021-07651-w

2018

  • 2. Lorscheider CA, Oliveira JIN, Dulz TA, Nogaroto V, Martins-Santos IC, Vicari MR.
    Comparative cytogenetics among three sympatric Hypostomus species: an evolutionary analysis in a high-endemic region.
    Brazilian Archives of Biology and Technology - https://doi.org/10.1590/1678-4324-2018180417

2014

  • 1. Schemberger MO, Oliveira JIN, Nogaroto V, Almeida MC, Artoni RF, Cestari MM, Moreira-Filho O, Vicari MR.
    Construction and Characterization of a Repetitive DNA Library in Parodontidae: a genomic and evolutionary approach to the degeneration of the W sex chromosome.
    Zebrafish - https://doi.org/10.1089/zeb.2014.1013